- Transcriptional interference between convergent promoters caused by elongation over the promoter.[Mol Cell. 2004]
Callen BP, Shearwin KE, Egan JB
Mol Cell. 2004 Jun 4; 14(5):647-56.
2.4.
- The challenge of regulation in a minimal photoautotroph: non-coding RNAs in Prochlorococcus.[PLoS Genet. 2008]
Steglich C, Futschik ME, Lindell D, Voss B, Chisholm SW, Hess WR
PLoS Genet. 2008 Aug 29; 4(8):e1000173.
- Genes for small, noncoding RNAs under sporulation control in Bacillus subtilis.[J Bacteriol. 2006]
Silvaggi JM, Perkins JB, Losick R
J Bacteriol. 2006 Jan; 188(2):532-41.
- The Listeria transcriptional landscape from saprophytism to virulence.[Nature. 2009]
Toledo-Arana A, Dussurget O, Nikitas G, Sesto N, Guet-Revillet H, Balestrino D, Loh E, Gripenland J, Tiensuu T, Vaitkevicius K, Barthelemy M, Vergassola M, Nahori MA, Soubigou G, Régnault B, Coppée JY, Lecuit M, Johansson J, Cossart P
Nature. 2009 Jun 18; 459(7249):950-6.
An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803.
Mitschke J, Georg J, Scholz I, Sharma CM, Dienst D, Bantscheff J, Voss B, Steglich C, Wilde A, Vogel J, Hess WR
Proc Natl Acad Sci U S A. 2011 Feb 1; 108(5):2124-9.
Evidence for a major role of antisense RNAs in cyanobacterial gene regulation.
Georg J, Voss B, Scholz I, Mitschke J, Wilde A, Hess WR
Mol Syst Biol. 2009; 5():305.
An internal antisense RNA regulates expression of the photosynthesis gene isiA.
Dühring U, Axmann IM, Hess WR, Wilde A
Proc Natl Acad Sci U S A. 2006 May 2; 103(18):7054-8.
--- 2, .
2.4.1
- S-box and T-box riboswitches and antisense RNA control a sulfur metabolic operon of Clostridium acetobutylicum.[Nucleic Acids Res. 2008]
André G, Even S, Putzer H, Burguière P, Croux C, Danchin A, Martin-Verstraete I, Soutourina O
Nucleic Acids Res. 2008 Oct; 36(18):5955-69.
- An antisense RNA that governs the expression kinetics of a multifunctional virulence gene.[Mol Microbiol. 2010]
Lee EJ, Groisman EA
Mol Microbiol. 2010 May; 76(4):1020-33.
- A cis-encoded antisense small RNA regulated by the HP0165-HP0166 two-component system controls expression of ureB in Helicobacter pylori.[J Bacteriol. 2011]
Wen Y, Feng J, Scott DR, Marcus EA, Sachs G
J Bacteriol. 2011 Jan; 193(1):40-51.
2.5 -
-
- Repression of small toxic protein synthesis by the Sib and OhsC small RNAs.[Mol Microbiol. 2008]
Fozo EM, Kawano M, Fontaine F, Kaya Y, Mendieta KS, Jones KL, Ocampo A, Rudd KE, Storz G
Mol Microbiol. 2008 Dec; 70(5):1076-93.
- Recognition and discrimination of target mRNAs by Sib RNAs, a cis-encoded sRNA family.[Nucleic Acids Res. 2010]
Han K, Kim KS, Bak G, Park H, Lee Y
|
|
|
Nucleic Acids Res. 2010 Sep; 38(17):5851-66.
,
- Thermodynamics of RNA-RNA binding.[Bioinformatics. 2006]
Mückstein U, Tafer H, Hackermüller J, Bernhart SH, Stadler PF, Hofacker IL
Bioinformatics. 2006 May 15; 22(10):1177-82.
- The role of site accessibility in microRNA target recognition.[Nat Genet. 2007]
Kertesz M, Iovino N, Unnerstall U, Gaul U, Segal E
Nat Genet. 2007 Oct; 39(10):1278-84.
- IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions.[Bioinformatics. 2008]
Busch A, Richter AS, Backofen R
Bioinformatics. 2008 Dec 15; 24(24):2849-56.
3
- The continuing story of endoribonuclease III.[J Mol Microbiol Biotechnol. 2004]
Drider D, Condon C
J Mol Microbiol Biotechnol. 2004; 8(4):195-200.
- Four-way junctions in antisense RNA-mRNA complexes involved in plasmid replication control: a common theme?[J Mol Biol. 2001]
Kolb FA, Westhof E, Ehresmann B, Ehresmann C, Wagner EG, Romby P
J Mol Biol. 2001 Jun 8; 309(3):605-14.
3,
- RNase E is required for induction of the glutamate-dependent acid resistance system in Escherichia coli.[Biosci Biotechnol Biochem. 2007]
Takada A, Umitsuki G, Nagai K, Wachi M
Biosci Biotechnol Biochem. 2007 Jan; 71(1):158-64.
SymR: An antisense RNA controls synthesis of an SOS-induced toxin evolved from an antitoxin.
Kawano M, Aravind L, Storz G
Mol Microbiol. 2007 May; 64(3):738-54.
AmgR: An antisense RNA that governs the expression kinetics of a multifunctional virulence gene.
Lee EJ, Groisman EA
Mol Microbiol. 2010 May; 76(4):1020-33.
2.6
2.6.1
IsrR/isiA (An internal antisense RNA regulates expression of the photosynthesis gene isiA.[Proc Natl Acad Sci U S A. 2006]
Dühring U, Axmann IM, Hess WR, Wilde A
Proc Natl Acad Sci U S A. 2006 May 2; 103(18):7054-8.)
- Quantitative characteristics of gene regulation by small RNA.[PLoS Biol. 2007]
Levine E, Zhang Z, Kuhlman T, Hwa T
PLoS Biol. 2007 Sep; 5(9):e229.
- Small RNAs establish delays and temporal thresholds in gene expression.[Biophys J. 2008]
Legewie S, Dienst D, Wilde A, Herzel H, Axmann IM
Biophys J. 2008 Oct; 95(7):3232-8.
- ( )
- Real-time kinetics of gene activity in individual bacteria.[Cell. 2005]
Golding I, Paulsson J, Zawilski SM, Cox EC
Cell. 2005 Dec 16; 123(6):1025-36.
, ( isiA (An internal antisense RNA regulates expression of the photosynthesis gene isiA.
Dühring U, Axmann IM, Hess WR, Wilde A
Proc Natl Acad Sci U S A. 2006 May 2; 103(18):7054-8.) symE (An antisense RNA controls synthesis of an SOS-induced toxin evolved from an antitoxin.
Kawano M, Aravind L, Storz G. Mol Microbiol. 2007 May; 64(3):738-54.) - (Small toxic proteins and the antisense RNAs that repress them.[Microbiol Mol Biol Rev. 2008] Fozo EM, Hemm MR, Storz G. Microbiol Mol Biol Rev. 2008 Dec; 72(4):579-89, Table of Contents.)
|
|
|
- Cartography of methicillin-resistant S. aureus transcripts: detection, orientation and temporal expression during growth phase and stress conditions.[PLoS One. 2010]
Beaume M, Hernandez D, Farinelli L, Deluen C, Linder P, Gaspin C, Romby P, Schrenzel J, Francois P
PLoS One. 2010 May 20; 5(5):e10725.
- Regulation of transposition in bacteria.[Res Microbiol. 2004]
Nagy Z, Chandler M
Res Microbiol. 2004 Jun; 155(5):387-98.
- Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq.[PLoS Genet. 2008]
Sittka A, Lucchini S, Papenfort K, Sharma CM, Rolle K, Binnewies TT, Hinton JC, Vogel J
PLoS Genet. 2008 Aug 22; 4(8):e1000163.
- A quantitative comparison of sRNA-based and protein-based gene regulation.[Mol Syst Biol. 2008]
Mehta P, Goyal S, Wingreen NS
Mol Syst Biol. 2008; 4():221.
- Small RNAs establish gene expression thresholds.[Curr Opin Microbiol. 2008]
Levine E, Hwa T
Curr Opin Microbiol. 2008 Dec; 11(6):574-9.
, , ,
- Antisense expression increases gene expression variability and locus interdependency.[Mol Syst Biol. 2011]
Xu Z, Wei W, Gagneur J, Clauder-Münster S, Smolik M, Huber W, Steinmetz LM
Mol Syst Biol. 2011 Feb 15; 7():468.
,
